{ "_id": "6a1f3124b401979e73427ab3", "Package": "bayesPO", "Type": "Package", "Title": "Bayesian Inference for Presence-Only Data", "Version": "0.5.1", "Date": "2024-09-03", "Authors@R": "person(\"Guido\", \"Alberti Moreira\", email = \"guidoalber@gmail.com\",\nrole = c(\"cre\",\"aut\"), comment=c(ORCID=\"0000-0001-7557-0874\"))", "Contact": "Guido Alberti Moreira ", "Maintainer": "Guido Alberti Moreira ", "Description": "Presence-Only data is best modelled with a Point Process\nModel. The work of Moreira and Gamerman (2022)\n provides a way to use exact Bayesian\ninference to model this type of data, which is implemented in\nthis package.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.3.1", "Collate": "'RcppExports.R' 'bayesPO-package.R' 'prior-class.R'\n'initial-class.R' 'model-class.R' 'fit-class.R' 'bayesPO.R'\n'covariate_importance-class.R'", "VignetteBuilder": "knitr", "Repository": "https://guidoamoreira.r-universe.dev", "Date/Publication": "2024-11-08 17:42:40 UTC", "RemoteUrl": "https://github.com/guidoamoreira/bayespo", "RemoteRef": "HEAD", "RemoteSha": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-15 08:30:15 UTC", "User": "root" }, "Author": "Guido Alberti Moreira [cre, aut] (ORCID:\n)", "MD5sum": "64414ba2645fb7958c172b9f0d224600", "_user": "guidoamoreira", "_type": "src", "_file": "bayesPO_0.5.1.tar.gz", "_fileid": "449b73e44454f5164a9e19c2d8b4324954d7c46a0e8ed4272b9cb86c99b60fbd", "_filesize": 681167, "_sha256": "449b73e44454f5164a9e19c2d8b4324954d7c46a0e8ed4272b9cb86c99b60fbd", "_created": "2026-05-15T08:30:15.000Z", "_published": "2026-06-02T19:38:12.974Z", "_distro": "noble", "_jobs": [ { "job": 79156305589, "time": 186, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7013154443" }, { "job": 79156305966, "time": 153, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7013146405" }, { "job": 79156305944, "time": 141, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7013143306" }, { "job": 79156306250, "time": 153, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7013146178" }, { "job": 79156306228, "time": 156, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7013142082" }, { "job": 79156305865, "time": 466, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7013214189" }, { "job": 79156305794, "time": 152, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7013141142" }, { "job": 79156305856, "time": 279, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7013171420" }, { "job": 79156304659, "time": 199, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7013106469" }, { "job": 79156304753, "time": 130, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7367966032" }, { "job": 79156305904, "time": 141, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7013143139" }, { "job": 79156306161, "time": 130, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7013140603" }, { "job": 79156305534, "time": 149, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7013144971" } ], "_buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/guidoamoreira/bayespo", "_commit": { "id": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "author": "Guido Alberti Moreira ", "committer": "Guido Alberti Moreira ", "message": "Fixed covariates importance\n", "time": 1731087760 }, "_maintainer": { "name": "Guido Alberti Moreira", "email": "guidoalber@gmail.com", "login": "guidoamoreira", "uuid": 42647037, "orcid": "0000-0001-7557-0874" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "RcppProgress", "role": "LinkingTo" }, { "package": "Rcpp", "role": "Imports" }, { "package": "coda", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "RcppProgress", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "bayesplot", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "webshot", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "MASS", "role": "Suggests" } ], "_owner": "guidoamoreira", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 4, "_contributors": [ { "user": "guidoamoreira", "count": 82, "uuid": 42647037 }, { "user": "laurateixeira", "count": 1, "uuid": 56408434 } ], "_userbio": { "uuid": 42647037, "type": "user", "name": "Guido Alberti Moreira" }, "_downloads": { "count": 226, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/bayesPO" }, "_devurl": "https://github.com/guidoamoreira/bayespo", "_searchresults": 7, "_topics": [ "cpp", "openmp" ], "_rbuild": "4.6.0", "_assets": [ "extra/bayesPO.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/guidoamoreira/bayespo", "_realowner": "guidoamoreira", "_cranurl": true, "_releases": [ { "version": "0.2.0", "date": "2021-10-18" }, { "version": "0.3.1", "date": "2021-10-26" }, { "version": "0.4.1", "date": "2023-09-26" }, { "version": "0.5.0", "date": "2024-02-01" } ], "_exports": [ "as.array", "as.data.frame", "as.matrix", "bayesPO_model", "fit_bayesPO", "GammaPrior", "initial", "NormalPrior", "print", "prior", "show", "summary" ], "_help": [ { "page": "bayesPO_fit-class", "title": "Class for the result of the MCMC procedure.", "topics": [ "$,bayesPO_fit-method", "+,bayesPO_fit,bayesPO_fit-method", "as.array,bayesPO_fit-method", "as.array.bayesPO_fit", "as.data.frame,bayesPO_fit-method", "as.data.frame.bayesPO_fit", "as.matrix,bayesPO_fit-method", "as.matrix.bayesPO_fit", "bayesPO_fit-class", "c,bayesPO_fit-method", "names,bayesPO_fit-method", "names.bayesPO_fit", "print,bayesPO_fit-method", "print.bayesPO_fit", "show,bayesPO_fit-method", "summary,bayesPO_fit-method", "summary.bayesPO_fit", "[[,bayesPO_fit-method" ] }, { "page": "bayesPO_initial-class", "title": "Class for the initial values for the MCMC for the bayesPO package", "topics": [ "$,bayesPO_initial-method", "*,bayesPO_initial,numeric-method", "*,numeric,bayesPO_initial-method", "+,bayesPO_initial,ANY-method", "+,bayesPO_initial,list-method", "+,list,bayesPO_initial-method", "bayesPO_initial-class", "names,bayesPO_initial-method", "print,bayesPO_initial-method", "print.bayesPO_initial", "show,bayesPO_initial-method" ] }, { "page": "bayesPO_model", "title": "Build a model to be used in the 'bayesPO' fitting function", "topics": [ "bayesPO_model" ] }, { "page": "bayesPO_model-class", "title": "Class that defines a model for the bayesPO package.", "topics": [ "$,bayesPO_model-method", "$<-,bayesPO_model-method", "bayesPO_model-class", "names,bayesPO_model-method", "print,bayesPO_model-method", "print.bayesPO_model", "show,bayesPO_model-method" ] }, { "page": "bayesPO_prior-class", "title": "Joint prior class for the bayesPO package parameters", "topics": [ "$,bayesPO_prior-method", "$<-,bayesPO_prior-method", "bayesPO_prior-class", "names,bayesPO_prior-method", "print,bayesPO_prior-method", "print.bayesPO_prior", "show,bayesPO_prior-method" ] }, { "page": "BetaDeltaPrior-class", "title": "Generic class for the beta and delta parameters.", "topics": [ "BetaDeltaPrior-class", "print,BetaDeltaPrior-method", "print.BetaDeltaPrior", "show,BetaDeltaPrior-method" ] }, { "page": "covariates_importance-class", "title": "Class for covariates importance matrices", "topics": [ "barplot.covariates_importance", "boxplot.covariates_importance", "covariates_importance-class", "plot.covariates_importance", "print.covariates_importance" ] }, { "page": "fit_bayesPO", "title": "Fit presence-only data using a Bayesian Poisson Process model", "topics": [ "fit_bayesPO", "fit_bayesPO,bayesPO_fit,matrix-method", "fit_bayesPO,bayesPO_model,matrix-method" ] }, { "page": "GammaPrior", "title": "Create a Gamma prior object for model specification.", "topics": [ "GammaPrior" ] }, { "page": "GammaPrior-class", "title": "Gamma prior class for the LambdaStar parameter.", "topics": [ "$,GammaPrior-method", "$<-,GammaPrior-method", "GammaPrior-class", "names,GammaPrior-method", "print,GammaPrior-method", "print.GammaPrior", "show,GammaPrior-method" ] }, { "page": "initial", "title": "Initial values constructor for bayesPO modeling", "topics": [ "initial" ] }, { "page": "LambdaStarPrior-class", "title": "Generic class for the LambdaStar parameters.", "topics": [ "LambdaStarPrior-class", "show,LambdaStarPrior-method" ] }, { "page": "NormalPrior", "title": "Create a Normal prior object for model specification.", "topics": [ "NormalPrior" ] }, { "page": "NormalPrior-class", "title": "Normal prior class for Beta and Delta parameters.", "topics": [ "$,NormalPrior-method", "$<-,NormalPrior-method", "names,NormalPrior-method", "NormalPrior-class", "print,NormalPrior-method", "print.NormalPrior", "show,NormalPrior-method" ] }, { "page": "prior", "title": "Build a joint prior for bayesPO model parameters", "topics": [ "prior" ] } ], "_readme": "https://github.com/guidoamoreira/bayespo/raw/HEAD/README.md", "_rundeps": [ "coda", "lattice", "Rcpp", "RcppEigen", "RcppProgress" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_vignettes": [ { "source": "bayesPO.Rmd", "filename": "bayesPO.html", "title": "bayesPO", "engine": "knitr::rmarkdown", "headings": [ "Simulating some data", "Creating the model", "Fitting the model", "Checking results" ], "created": "2021-10-13 19:17:57", "modified": "2023-09-26 05:27:07", "commits": 5 } ], "_score": 4.301029995663981, "_indexed": true, "_nocasepkg": "bayespo", "_universes": [ "guidoamoreira" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.5.1", "date": "2026-05-15T08:33:22.000Z", "distro": "noble", "arch": "aarch64", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "89fb7340ff3c13b012a0bba8b9762159ffed721ea4c1bd24e86df40f50f2e30f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" }, { "r": "4.7.0", "os": "linux", "version": "0.5.1", "date": "2026-05-15T08:32:47.000Z", "distro": "noble", "arch": "x86_64", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "f2d12cbce905d1b30c087b7ce02019175ab7ea26c10012fb85fe0124b9da675b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" }, { "r": "4.6.0", "os": "linux", "version": "0.5.1", "date": "2026-05-15T08:32:39.000Z", "distro": "noble", "arch": "aarch64", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "de123abee5c1d4354942dc1aaaf7067f8771c8a231f2946e628b44ac81fa8f3c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" }, { "r": "4.6.0", "os": "linux", "version": "0.5.1", "date": "2026-05-15T08:32:47.000Z", "distro": "noble", "arch": "x86_64", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "bfdbf51daed2fc758a0bb859fac33d0349c2e086129f3ad45fb978827afdde44", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" }, { "r": "4.5.3", "os": "mac", "version": "0.5.1", "date": "2026-05-15T08:32:42.000Z", "arch": "aarch64", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "d89ae7b7cd7a2d81b2658598c3bfcef21dd96fb86d87432ac17a9cb12b127f41", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" }, { "r": "4.5.3", "os": "mac", "version": "0.5.1", "date": "2026-05-15T08:36:11.000Z", "arch": "x86_64", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "c5cb9eaf6890a5e5f6d88d4fe1a12706d53163241354d68e94cf6a6d88f60f98", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" }, { "r": "4.6.0", "os": "mac", "version": "0.5.1", "date": "2026-05-15T08:32:36.000Z", "arch": "aarch64", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "2cb68bcc0f3e4e97d55ad5e5c1eb9b0c930b3d484569e0738ec1a60c5dd9bf60", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" }, { "r": "4.6.0", "os": "mac", "version": "0.5.1", "date": "2026-05-15T08:34:02.000Z", "arch": "x86_64", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "74d8dc94c58138853ed6d1214027f868122c9123d6d361a9b15e170c4746ee7f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" }, { "r": "4.7.0", "os": "win", "version": "0.5.1", "date": "2026-05-15T08:32:00.000Z", "arch": "x86_64", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "7229fd57420e46e241afa6bf314ca9eb0c7fe35216e1ccc6e154d6d9f4d8d0bc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" }, { "r": "4.5.3", "os": "win", "version": "0.5.1", "date": "2026-05-15T08:31:53.000Z", "arch": "x86_64", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "4bd1e36315938351e7c4533c4ed6e2b7c6091f9279c43079aa7b11fc23fcead9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" }, { "r": "4.6.0", "os": "win", "version": "0.5.1", "date": "2026-05-15T08:31:59.000Z", "arch": "x86_64", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "85bb28dd43d9b4ed12226fb7f6d65b51b08740f5030d35c2478ffdc49aa3392c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" }, { "r": "4.6.0", "os": "wasm", "version": "0.5.1", "date": "2026-06-02T19:37:35.000Z", "arch": "emscripten", "commit": "76e8b9fe7f0d14d64cb7aab14dd37353ecbf2fd6", "fileid": "d11a9a4be6e85af3f21ae0b8bb7a9caf609a718a8f3925d3c78b13f1d1befc6f", "status": "success", "buildurl": "https://github.com/r-universe/guidoamoreira/actions/runs/25908118240" } ] }